Xanthusbase: Adapting wikipedia principles to a model organism database

Bradley I. Arshinoff, Garret Suen, Eric M. Just, Sohel M. Merchant, Warren A. Kibbe, Rex L. Chisholm, Roy D. Welch

Research output: Contribution to journalArticle

11 Scopus citations

Abstract

xanthusBase (http://www.xanthusbase.org) is the official model organism database (MOD) for the social bacterium Myxococcus xanthus. In many respects, M.xanthus represents the pioneer model organism (MO) for studying the genetic, biochemical, and mechanistic basis of prokaryotic multicellularity, a topic that has garnered considerable attention due to the significance of biofilms in both basic and applied microbiology research. To facilitate its utility, the design of xanthusBase incorporates open-source software, leveraging the cumulative experience made available through the Generic Model Organism Database (GMOD) project, MediaWiki (http://www.mediawiki.org), and dictyBase (http://www.dictybase.org), to create a MOD that is both highly useful and easily navigable. In addition, we have incorporated a unique Wikipedia-style curation model which exploits the internet's inherent interactivity, thus enabling M.xanthus and other myxobacterial researchers to contribute directly toward the ongoing genome annotation.

Original languageEnglish (US)
Pages (from-to)D422-D426
JournalNucleic acids research
Volume35
Issue numberSUPPL. 1
DOIs
StatePublished - Jan 2007

ASJC Scopus subject areas

  • Genetics

Fingerprint Dive into the research topics of 'Xanthusbase: Adapting wikipedia principles to a model organism database'. Together they form a unique fingerprint.

  • Cite this

    Arshinoff, B. I., Suen, G., Just, E. M., Merchant, S. M., Kibbe, W. A., Chisholm, R. L., & Welch, R. D. (2007). Xanthusbase: Adapting wikipedia principles to a model organism database. Nucleic acids research, 35(SUPPL. 1), D422-D426. https://doi.org/10.1093/nar/gkl881