TY - CHAP
T1 - SNP Quality Assessment
AU - Wang, Shaolin
AU - Liu, Hong
AU - Liu, Zhanjiang John
PY - 2010/12/10
Y1 - 2010/12/10
KW - Assessing SNP qualities after base calling - major criterion, sequence redundancy at SNP site
KW - Genome sequencing projects, using traditional Sanger sequencing - single individual with two sets of chromosomes, from which SNPs can be identified
KW - Number of sequences in contigs
KW - Quality assessment parameters - for EST-derived SNPs
KW - SNP quality assessment, and EST contig size and sequence frequency of alleles
KW - SNP quality assessment, identification of single-nucleotide polymorphisms (SNPs), and alignment of multiple sequences from different genomes
KW - SNPs derived from ESTs, important SNPs - residing within genes, differences in protein-coding capacities
KW - SNPs, generated through whole genome sequencing project
KW - Sequence allele distribution - most important indicator of SNP quality
KW - Sequences flanking SNPs and their sequence quality
UR - http://www.scopus.com/inward/record.url?scp=84886198869&partnerID=8YFLogxK
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U2 - 10.1002/9780470958964.ch7
DO - 10.1002/9780470958964.ch7
M3 - Chapter
AN - SCOPUS:84886198869
SN - 9780813806372
SP - 109
EP - 121
BT - Next Generation Sequencing and Whole Genome Selection in Aquaculture
PB - Wiley Blackwell
ER -