SNP Discovery through EST Data Mining

Shaolin Wang; Zhanjiang John Liu

doi:10.1002/9780470958964.ch6

SNP Discovery through EST Data Mining

Research output: Chapter in Book/Entry/Poem › Chapter

Original language	English (US)
Title of host publication	Next Generation Sequencing and Whole Genome Selection in Aquaculture
Publisher	Wiley Blackwell
Pages	91-108
Number of pages	18
ISBN (Print)	9780813806372
DOIs	https://doi.org/10.1002/9780470958964.ch6
State	Published - Dec 10 2010
Externally published	Yes

Keywords

CLC Genomics Workbench, package - integrating analysis functions for nucleotide and protein sequences, as sequence assembly
EST-derived SNPs - correlating genes in terms of genomic locations
Identification of SNP using ClustalW - and NCBI BLAST
Key issue of single-nucleotide polymorphism (SNP) marker applications - in aquaculture species, availability of SNPs
Multiple alignment tool, The ClustalX/ClustalW program - for protein and nucleic acid multiple sequence alignments and phylogenetic tree construction
SNP discovery through EST data mining
SNP discovery through EST data mining - advantages and disadvantages
SNP discovery using EST, alignment of multiple EST sequences - from a single transcript
SNP discovery using ESTs - generated by Sanger sequencing
Transcript sequences, using next generation sequencing platforms - as Illumina Genome Analyzer and Roche 454 sequencer

ASJC Scopus subject areas

General Agricultural and Biological Sciences

Access to Document

10.1002/9780470958964.ch6

Cite this

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title = "SNP Discovery through EST Data Mining",

keywords = "CLC Genomics Workbench, package - integrating analysis functions for nucleotide and protein sequences, as sequence assembly, EST-derived SNPs - correlating genes in terms of genomic locations, Identification of SNP using ClustalW - and NCBI BLAST, Key issue of single-nucleotide polymorphism (SNP) marker applications - in aquaculture species, availability of SNPs, Multiple alignment tool, The ClustalX/ClustalW program - for protein and nucleic acid multiple sequence alignments and phylogenetic tree construction, SNP discovery through EST data mining, SNP discovery through EST data mining - advantages and disadvantages, SNP discovery using EST, alignment of multiple EST sequences - from a single transcript, SNP discovery using ESTs - generated by Sanger sequencing, Transcript sequences, using next generation sequencing platforms - as Illumina Genome Analyzer and Roche 454 sequencer",

author = "Shaolin Wang and Liu, {Zhanjiang John}",

year = "2010",

month = dec,

day = "10",

doi = "10.1002/9780470958964.ch6",

language = "English (US)",

isbn = "9780813806372",

pages = "91--108",

booktitle = "Next Generation Sequencing and Whole Genome Selection in Aquaculture",

publisher = "Wiley Blackwell",

}

TY - CHAP

T1 - SNP Discovery through EST Data Mining

AU - Wang, Shaolin

AU - Liu, Zhanjiang John

PY - 2010/12/10

Y1 - 2010/12/10

KW - CLC Genomics Workbench, package - integrating analysis functions for nucleotide and protein sequences, as sequence assembly

KW - EST-derived SNPs - correlating genes in terms of genomic locations

KW - Identification of SNP using ClustalW - and NCBI BLAST

KW - Key issue of single-nucleotide polymorphism (SNP) marker applications - in aquaculture species, availability of SNPs

KW - Multiple alignment tool, The ClustalX/ClustalW program - for protein and nucleic acid multiple sequence alignments and phylogenetic tree construction

KW - SNP discovery through EST data mining

KW - SNP discovery through EST data mining - advantages and disadvantages

KW - SNP discovery using EST, alignment of multiple EST sequences - from a single transcript

KW - SNP discovery using ESTs - generated by Sanger sequencing

KW - Transcript sequences, using next generation sequencing platforms - as Illumina Genome Analyzer and Roche 454 sequencer

UR - http://www.scopus.com/inward/record.url?scp=84886192977&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84886192977&partnerID=8YFLogxK

U2 - 10.1002/9780470958964.ch6

DO - 10.1002/9780470958964.ch6

M3 - Chapter

AN - SCOPUS:84886192977

SN - 9780813806372

SP - 91

EP - 108

BT - Next Generation Sequencing and Whole Genome Selection in Aquaculture

PB - Wiley Blackwell

ER -

SNP Discovery through EST Data Mining

Keywords

ASJC Scopus subject areas

Access to Document

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