TY - JOUR
T1 - Next generation sequencing yields the complete mitochondrial genome of the striped raphael catfish, Platydoras armatulus (Siluriformes: Doradidae)
AU - Liu, Shikai
AU - Yao, Jun
AU - Zhang, Jiaren
AU - Liu, Zhanjiang
PY - 2016/5/1
Y1 - 2016/5/1
N2 - Striped raphael catfish, Platydoras armatulus, belongs to catfish family Doradidae, which are endemic to South America and featured by a single row of thorny scutes along the lateral line. In this study, we determined the complete mitochondrial genome of P. armatulus by next generation sequencing of genomic DNA without prior sample processing or primer design. Bioinformatics analysis provided the full-length mitogenome sequence of 16,470 bp. The P. armatulus mitogenome is composed of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 1 control region, showing typical circular molecule structure as in other vertebrates. The whole genome base composition was estimated to be 30.9% A, 25.2% T, 15.9% G and 28.0% C, with A/T bias of 56.1%. The generation of P. armatulus mitogenome sequence enriched catfish molecular resources that are valuable for phylogenetic analysis and species identification studies.
AB - Striped raphael catfish, Platydoras armatulus, belongs to catfish family Doradidae, which are endemic to South America and featured by a single row of thorny scutes along the lateral line. In this study, we determined the complete mitochondrial genome of P. armatulus by next generation sequencing of genomic DNA without prior sample processing or primer design. Bioinformatics analysis provided the full-length mitogenome sequence of 16,470 bp. The P. armatulus mitogenome is composed of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 1 control region, showing typical circular molecule structure as in other vertebrates. The whole genome base composition was estimated to be 30.9% A, 25.2% T, 15.9% G and 28.0% C, with A/T bias of 56.1%. The generation of P. armatulus mitogenome sequence enriched catfish molecular resources that are valuable for phylogenetic analysis and species identification studies.
KW - Mitochondrial genome
KW - Platydoras armatulus
KW - next generation sequencing
KW - striped raphael catfish
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U2 - 10.3109/19401736.2014.971308
DO - 10.3109/19401736.2014.971308
M3 - Article
C2 - 25329257
AN - SCOPUS:85000923912
SN - 2470-1394
VL - 27
SP - 1963
EP - 1964
JO - Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis
JF - Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis
IS - 3
ER -