Generation and analysis of 10 000 ESTs from the half-smooth tongue sole Cynoglossus semilaevis and identification of microsatellite and SNP markers

Z. Sha, S. Wang, Z. Zhuang, Q. Wang, Q. Wang, P. Li, H. Ding, N. Wang, Z. Liu, S. Chen

Research output: Contribution to journalArticle

25 Scopus citations

Abstract

Three normalized cDNA libraries were constructed, two of which were constructed from reproductive tissues ovary and testis, and the other one from pooled immune tissues including head kidney, intestine, liver and spleen. A total of 10 542 clones were sequenced generating 10 128 expressed sequence tags (ESTs). Cluster analysis indicated a total of 5808 unique sequences including 1712 contigs and 4096 singletons. A total of 4249 (73%) of the unique ESTs had significant hits to the non-redundant protein database, 2253 of which were annotated using Gene Ontology (GO) terms. A total of 311 microsatellites (with 246 having sufficient flanking sequences for primer design) and 6294 putative SNPs were identified. These genome resources provide the material basis for future microarray development, marker validation and genetic linkage and QTL analysis.

Original languageEnglish (US)
Pages (from-to)1190-1204
Number of pages15
JournalJournal of Fish Biology
Volume76
Issue number5
DOIs
StatePublished - Apr 1 2010
Externally publishedYes

Keywords

  • Expressed sequence tag
  • Half-smooth tongue sole
  • Microsatellite
  • SNP

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Aquatic Science

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