Ab initio calculations and INS measurements of phonons and molecular vibrations in a model peptide compound - Urea

M. R. Johnson, K. Parlinski, I. Natkaniec, Bruce S Hudson

Research output: Contribution to journalArticle

39 Citations (Scopus)

Abstract

Density functional theory (DFT) methods, as implemented in the VASP code, are used to calculate the inelastic neutron scattering (INS) spectrum of urea, which has been measured on the TOSCA spectrometer at ISIS, UK and the NERA-PR spectrometer at Dubna, Russia. Urea presents an extended network of bifurcated hydrogen bonds resulting in significant dispersion of the vibrational excitations, both for external and internal modes. The small mass of the molecule also results in intense multiphonon contributions to the spectral profile. Recent, successful applications of DFT in molecular spectroscopy are extended here using the PHONON code to include dispersion and multiphonon contributions to the INS spectrum. Thus the whole spectral profile is calculated with only the crystal structure as input. The accuracy of the calculated normal modes is demonstrated for protonated and deuterated urea.

Original languageEnglish (US)
Pages (from-to)53-60
Number of pages8
JournalChemical Physics
Volume291
Issue number1
DOIs
StatePublished - Jun 1 2003

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Molecular vibrations
Inelastic neutron scattering
Phonons
ureas
peptides
Urea
inelastic scattering
neutron scattering
phonons
vibration
Peptides
Density functional theory
Spectrometers
Molecular spectroscopy
spectrometers
density functional theory
molecular spectroscopy
Russian Federation
profiles
Hydrogen bonds

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry
  • Spectroscopy
  • Atomic and Molecular Physics, and Optics

Cite this

Ab initio calculations and INS measurements of phonons and molecular vibrations in a model peptide compound - Urea. / Johnson, M. R.; Parlinski, K.; Natkaniec, I.; Hudson, Bruce S.

In: Chemical Physics, Vol. 291, No. 1, 01.06.2003, p. 53-60.

Research output: Contribution to journalArticle

Johnson, M. R. ; Parlinski, K. ; Natkaniec, I. ; Hudson, Bruce S. / Ab initio calculations and INS measurements of phonons and molecular vibrations in a model peptide compound - Urea. In: Chemical Physics. 2003 ; Vol. 291, No. 1. pp. 53-60.
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