• 9308 Citations
  • 56 h-Index
1986 …2022

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Article
2008

Quality assessment parameters for EST-derived SNPs from catfish

Wang, S., Sha, Z., Sonstegard, T. S., Liu, H., Xu, P., Somridhivej, B., Peatman, E., Kucuktas, H. & Liu, Z. J., Sep 30 2008, In : BMC Genomics. 9, 450.

Research output: Contribution to journalArticle

83 Scopus citations

Sequence and organization of the complete mitochondrial genomes of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri)

He, C., Han, J., Ge, L., Zhou, Z., Gao, X., Mu, Y., Liu, W., Cao, J. & Liu, Z. J., Jun 2008, In : DNA Sequence - Journal of DNA Sequencing and Mapping. 19, 3, p. 246-255 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri

Takano, T., Sha, Z., Peatman, E., Terhune, J., Liu, H., Kucuktas, H., Li, P., Edholm, E. S., Wilson, M. & Liu, Z. J., 2008, In : Developmental and Comparative Immunology. 32, 6, p. 693-705 13 p.

Research output: Contribution to journalArticle

55 Scopus citations

The warm temperature acclimation protein Wap65 as an immune response gene: Its duplicates are differentially regulated by temperature and bacterial infections

Sha, Z., Xu, P., Takano, T., Liu, H., Terhune, J. & Liu, Z. J., Mar 2008, In : Molecular Immunology. 45, 5, p. 1458-1469 12 p.

Research output: Contribution to journalArticle

56 Scopus citations
2009

Comparative analysis of catfish BAC end sequences with the zebrafish genome

Liu, H., Jiang, Y., Wang, S., Ninwichian, P., Somridhivej, B., Xu, P., Abernathy, J., Kucuktas, H. & Liu, Z. J., Dec 10 2009, In : BMC Genomics. 10, 592.

Research output: Contribution to journalArticle

35 Scopus citations

Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers

Kucuktas, H., Wang, S., Li, P., He, C., Xu, P., Sha, Z., Liu, H., Jiang, Y., Baoprasertkul, P., Somridhivej, B., Wang, Y., Abernathy, J., Guo, X., Liu, L., Muir, W. & Liu, Z. J., Apr 2009, In : Genetics. 181, 4, p. 1649-1660 12 p.

Research output: Contribution to journalArticle

94 Scopus citations

Molecular characteristics of an immobilization antigen gene of the fish-parasitic protozoan Ichthyophthirius multifiliis strain ARS-6

Xu, D. H., Panangala, V. S., Van Santen, V. L., Dybvig, K., Abernathy, J. W., Klesius, P. H., Liu, Z. J. & Russo, R., Nov 2009, In : Aquaculture Research. 40, 16, p. 1884-1892 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Molecular characterization of complement factor I reveals constitutive expression in channel catfish

Abernathy, J. W., Lu, J., Liu, H., Kucuktas, H. & Liu, Z. J., Sep 2009, In : Fish and Shellfish Immunology. 27, 3, p. 529-534 6 p.

Research output: Contribution to journalArticle

14 Scopus citations

NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish

Sha, Z., Abernathy, J. W., Wang, S., Li, P., Kucuktas, H., Liu, H., Peatman, E. & Liu, Z. J., Sep 2009, In : Developmental and Comparative Immunology. 33, 9, p. 991-999 9 p.

Research output: Contribution to journalArticle

80 Scopus citations

Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA

Abernathy, J. W., Xu, D. H., Li, P., Klesius, P., Kucuktas, H. & Liu, Z. J., Sep 2009, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 4, 3, p. 179-186 8 p.

Research output: Contribution to journalArticle

4 Scopus citations
2010

Alternative splicing in teleost fish genomes: Same-species and cross-species analysis and comparisons

Lu, J., Peatman, E., Wang, W., Yang, Q., Abernathy, J., Wang, S., Kucuktas, H. & Liu, Z. J., Jun 2010, In : Molecular Genetics and Genomics. 283, 6, p. 531-539 9 p.

Research output: Contribution to journalArticle

34 Scopus citations

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

Wang, S., Peatman, E., Abernathy, J., Waldbieser, G., Lindquist, E., Richardson, P., Lucas, S., Wang, M., Li, P., Thimmapuram, J., Liu, L., Vullaganti, D., Kucuktas, H., Murdock, C., Small, B. C., Wilson, M., Liu, H., Jiang, Y., Lee, Y., Chen, F. & 21 others, Lu, J., Wang, W., Xu, P., Somridhivej, B., Baoprasertkul, P., Quilang, J., Sha, Z., Bao, B., Wang, Y., Wang, Q., Takano, T., Nandi, S., Liu, S., Wong, L., Kaltenboeck, L., Quiniou, S., Bengten, E., Miller, N., Trant, J., Rokhsar, D. & Liu, Z. J., Jan 22 2010, In : Genome Biology. 11, 1, r8.

Research output: Contribution to journalArticle

74 Scopus citations

Generation and analysis of 10 000 ESTs from the half-smooth tongue sole Cynoglossus semilaevis and identification of microsatellite and SNP markers

Sha, Z., Wang, S., Zhuang, Z., Wang, Q., Wang, Q., Li, P., Ding, H., Wang, N., Liu, Z. J. & Chen, S., Apr 2010, In : Journal of Fish Biology. 76, 5, p. 1190-1204 15 p.

Research output: Contribution to journalArticle

24 Scopus citations

Generation and analysis of ESTs from the Grass carp, Ctenopharyngodon idellus

Xu, B., Wang, S., Jiang, Y., Yang, L., Li, P., Xie, C., Xing, J., Ke, Z., Li, J., Gai, J., Yang, G., Bao, B. & Liu, Z. J., Oct 2010, In : Animal Biotechnology. 21, 4, p. 217-225 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genetic differentiation between natural and hatchery stocks of Japanese scallop (Mizuhopecten yessoensis) as revealed by AFLP analysis.

Liu, W. D., Li, H. J., Bao, X. B., Gao, X. G., Li, Y. F., He, C. B. & Liu, Z. J., 2010, In : International Journal of Molecular Sciences. 11, 10, p. 3933-3941 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)

Chen, F., Lee, Y., Jiang, Y., Wang, S., Peatman, E., Abernathy, J., Liu, H., Liu, S., Kucuktas, H., Ke, C. & Liu, Z. J., 2010, In : PLoS One. 5, 7, e11546.

Research output: Contribution to journalArticle

35 Scopus citations

Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus)

Jiang, Y., Abernathy, J. W., Peatman, E., Liu, H., Wang, S., Xu, D. H., Kucuktas, H., Klesius, P. & Liu, Z. J., May 2010, In : Developmental and Comparative Immunology. 34, 5, p. 590-597 8 p.

Research output: Contribution to journalArticle

12 Scopus citations

Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge

Wang, S., Peatman, E., Liu, H., Bushek, D., Ford, S. E., Kucuktas, H., Quilang, J., Li, P., Wallace, R., Wang, Y., Guo, X. & Liu, Z. J., Dec 2010, In : Fish and Shellfish Immunology. 29, 6, p. 921-929 9 p.

Research output: Contribution to journalArticle

52 Scopus citations

Molecular and cellular evidence for biased mitotic gene conversion in hybrid scallop

Wang, S., Zhang, L., Hu, J., Bao, Z. & Liu, Z. J., 2010, In : BMC Evolutionary Biology. 10, 1, 6.

Research output: Contribution to journalArticle

9 Scopus citations

Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment

Liu, H., Takano, T., Peatman, E., Abernathy, J., Wang, S., Sha, Z., Kucuktas, H., Xu, D. H., Klesius, P. & Liu, Z. J., Jul 1 2010, In : Journal of Experimental Zoology Part A: Ecological Genetics and Physiology. 313 A, 6, p. 359-368 10 p.

Research output: Contribution to journalArticle

24 Scopus citations

Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus

Liu, H., Takano, T., Abernathy, J., Wang, S., Sha, Z., Jiang, Y., Terhune, J., Kucuktas, H., Peatman, E. & Liu, Z. J., Jan 2010, In : Fish and Shellfish Immunology. 28, 1, p. 159-166 8 p.

Research output: Contribution to journalArticle

38 Scopus citations
2011

A pilot study for channel catfish whole genome sequencing and de novo assembly

Jiang, Y., Lu, J., Peatman, E., Kucuktas, H., Liu, S., Wang, S., Sun, F. & Liu, Z. J., Dec 22 2011, In : BMC Genomics. 12, 629.

Research output: Contribution to journalArticle

22 Scopus citations
21 Scopus citations

DNA barcoding of catfish: Species authentication and phylogenetic assessment

Wong, L. L., Peatman, E., Lu, J., Kucuktas, H., He, S., Zhou, C., Na-nakorn, U. & Liu, Z. J., 2011, In : PLoS One. 6, 3, e17812.

Research output: Contribution to journalArticle

49 Scopus citations

Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence

Abernathy, J., Xu, D. H., Peatman, E., Kucuktas, H., Klesius, P. & Liu, Z. J., Dec 2011, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 6, 4, p. 382-392 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Liu, S., Zhou, Z., Lu, J., Sun, F., Wang, S., Liu, H., Jiang, Y., Kucuktas, H., Kaltenboeck, L., Peatman, E. & Liu, Z. J., Jan 21 2011, In : BMC Genomics. 12, 53.

Research output: Contribution to journalArticle

107 Scopus citations

Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses

Niu, D., Peatman, E., Liu, H., Lu, J., Kucuktas, H., Liu, S., Sun, F., Zhang, H., Feng, T., Zhou, Z., Terhune, J., Waldbieser, G., Li, J. & Liu, Z. J., May 2011, In : Developmental and Comparative Immunology. 35, 5, p. 568-579 12 p.

Research output: Contribution to journalArticle

27 Scopus citations

Molecular characterization and expression analysis of the channel catfish cathepsin D genes

Feng, T., Zhang, H., Liu, H., Zhou, Z., Niu, D., Wong, L., Kucuktas, H., Liu, X., Peatman, E. & Liu, Z. J., Jul 2011, In : Fish and Shellfish Immunology. 31, 1, p. 164-169 6 p.

Research output: Contribution to journalArticle

28 Scopus citations

Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus)

Liu, H., Peatman, E., Wang, W., Abernathy, J., Liu, S., Kucuktas, H., Lu, J., Xu, D. H., Klesius, P., Waldbieser, G. & Liu, Z. J., Mar 2011, In : Developmental and Comparative Immunology. 35, 3, p. 267-272 6 p.

Research output: Contribution to journalArticle

27 Scopus citations

Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus)

Liu, H., Peatman, E., Wang, W., Abernathy, J., Liu, S., Kucuktas, H., Terhune, J., Xu, D. H., Klesius, P. & Liu, Z. J., Mar 2011, In : Fish and Shellfish Immunology. 30, 3, p. 992-997 6 p.

Research output: Contribution to journalArticle

16 Scopus citations

Proliferating cells in suborbital tissue drive eye migration in flatfish

Bao, B., Ke, Z., Xing, J., Peatman, E., Liu, Z. J., Xie, C., Xu, B., Gai, J., Gong, X., Yang, G., Jiang, Y., Tang, W. & Ren, D., Mar 1 2011, In : Developmental Biology. 351, 1, p. 200-207 8 p.

Research output: Contribution to journalArticle

29 Scopus citations

Susceptibility of channel catfish, blue catfish and channel×blue catfish hybrid to Ichthyophthirius multifiliis

Xu, D. H., Klesius, P. H., Peatman, E. & Liu, Z. J., Feb 3 2011, In : Aquaculture. 311, 1-4, p. 25-30 6 p.

Research output: Contribution to journalArticle

9 Scopus citations

The catfish genome database cBARBEL: An informatic platform for genome biology of ictalurid catfish

Lu, J., Peatman, E., Yang, Q., Wang, S., Hu, Z., Reecy, J., Kucuktas, H. & Liu, Z. J., Jan 2011, In : Nucleic Acids Research. 39, SUPPL. 1

Research output: Contribution to journalArticle

27 Scopus citations
2012

Alternative complement pathway of channel catfish (Ictalurus punctatus): Molecular characterization, mapping and expression analysis of factors Bf/C2 and Df

Zhou, Z., Liu, H., Liu, S., Sun, F., Peatman, E., Kucuktas, H., Kaltenboeck, L., Feng, T., Zhang, H., Niu, D., Lu, J., Waldbieser, G. & Liu, Z. J., Jan 2012, In : Fish and Shellfish Immunology. 32, 1, p. 186-195 10 p.

Research output: Contribution to journalArticle

18 Scopus citations

Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus)

Zhang, H., Peatman, E., Liu, H., Niu, D., Feng, T., Kucuktas, H., Waldbieser, G., Chen, L. & Liu, Z. J., Jun 2012, In : Research in Veterinary Science. 92, 3, p. 408-413 6 p.

Research output: Contribution to journalArticle

36 Scopus citations

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

Liu, S., Zhang, Y., Zhou, Z., Waldbieser, G., Sun, F., Lu, J., Zhang, J., Jiang, Y., Zhang, H., Wang, X., Rajendran, K. V., Khoo, L., Kucuktas, H., Peatman, E. & Liu, Z. J., Jan 16 2012, In : BMC Genomics. 13, 1, 595.

Research output: Contribution to journalArticle

92 Scopus citations

Molecular characterization of three L-type lectin genes from channel catfish, Ictalurus punctatus and their responses to Edwardsiella ictaluri challenge

Zhang, H., Peatman, E., Liu, H., Feng, T., Chen, L. & Liu, Z. J., Apr 2012, In : Fish and Shellfish Immunology. 32, 4, p. 598-608 11 p.

Research output: Contribution to journalArticle

21 Scopus citations

Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs)

Rajendran, K. V., Zhang, J., Liu, S., Peatman, E., Kucuktas, H., Wang, X., Liu, H., Wood, T., Terhune, J. & Liu, Z. J., Jul 2012, In : Developmental and Comparative Immunology. 37, 3-4, p. 381-389 9 p.

Research output: Contribution to journalArticle

70 Scopus citations

Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors

Rajendran, K. V., Zhang, J., Liu, S., Kucuktas, H., Wang, X., Liu, H., Sha, Z., Terhune, J., Peatman, E. & Liu, Z. J., May 2012, In : Developmental and Comparative Immunology. 37, 1, p. 77-86 10 p.

Research output: Contribution to journalArticle

57 Scopus citations

Profiling of gene duplication patterns of sequenced teleost genomes: Evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

Lu, J., Peatman, E., Tang, H., Lewis, J. & Liu, Z. J., Jun 15 2012, In : BMC Genomics. 13, 1, 246.

Research output: Contribution to journalArticle

50 Scopus citations

Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia: Unionidae), using an RNA-seq-based approach

Wang, R., Li, C., Stoeckel, J., Moyer, G., Liu, Z. J. & Peatman, E., 2012, In : Freshwater Science. 31, 3, p. 695-708 14 p.

Research output: Contribution to journalArticle

20 Scopus citations

RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus

Li, C., Zhang, Y., Wang, R., Lu, J., Nandi, S., Mohanty, S., Terhune, J., Liu, Z. J. & Peatman, E., May 2012, In : Fish and Shellfish Immunology. 32, 5, p. 816-827 12 p.

Research output: Contribution to journalArticle

137 Scopus citations

Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map

Ninwichian, P., Peatman, E., Liu, H., Kucuktas, H., Somridhivej, B., Liu, S., Li, P., Jiang, Y., Sha, Z., Kaltenboeck, L., Abernathy, J. W., Wang, W., Chen, F., Lee, Y., Wong, L., Wang, S., Lu, J. & Liu, Z. J., Oct 2012, In : G3: Genes, Genomes, Genetics. 2, 10, p. 1233-1241 9 p.

Research output: Contribution to journalArticle

36 Scopus citations

Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection

Sun, F., Peatman, E., Li, C., Liu, S., Jiang, Y., Zhou, Z. & Liu, Z. J., Sep 2012, In : Developmental and Comparative Immunology. 38, 1, p. 169-180 12 p.

Research output: Contribution to journalArticle

120 Scopus citations
2013

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

Wang, R., Sun, L., Bao, L., Zhang, J., Jiang, Y., Yao, J., Song, L., Feng, J., Liu, S. & Liu, Z. J., Dec 30 2013, In : BMC Genomics. 14, 1, 929.

Research output: Contribution to journalArticle

43 Scopus citations

Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements

Zhang, Y., Liu, S., Lu, J., Jiang, Y., Gao, X., Ninwichian, P., Li, C., Waldbieser, G. & Liu, Z. J., Jun 10 2013, In : BMC Genomics. 14, 1, 387.

Research output: Contribution to journalArticle

13 Scopus citations

Development of Molecular Resources for an Intertidal Clam, Sinonovacula constricta, Using 454 Transcriptome Sequencing

Niu, D., Wang, L., Sun, F., Liu, Z. J. & Li, J., Jul 25 2013, In : PLoS One. 8, 7, e67456.

Research output: Contribution to journalArticle

33 Scopus citations

Effect of Nutrient Restriction and Re-Feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus)

Preziosa, E., Liu, S., Terova, G., Gao, X., Liu, H., Kucuktas, H., Terhune, J. & Liu, Z. J., Mar 19 2013, In : PLoS One. 8, 3, e59404.

Research output: Contribution to journalArticle

12 Scopus citations

Four lysozymes (one c-type and three g-type) in catfish are drastically butdifferentially induced after bacterial infection

Wang, R., Feng, J., Li, C., Liu, S., Zhang, Y. & Liu, Z. J., Jul 2013, In : Fish and Shellfish Immunology. 35, 1, p. 136-145 10 p.

Research output: Contribution to journalArticle

27 Scopus citations

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding

Jiang, Y., Ninwichian, P., Liu, S., Zhang, J., Kucuktas, H., Sun, F., Kaltenboeck, L., Sun, L., Bao, L. & Liu, Z. J., Oct 24 2013, In : PLoS One. 8, 10, e78872.

Research output: Contribution to journalArticle

4 Scopus citations