• 9453 Citations
  • 56 h-Index
1986 …2022

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2012

Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus)

Zhang, H., Peatman, E., Liu, H., Niu, D., Feng, T., Kucuktas, H., Waldbieser, G., Chen, L. & Liu, Z., Jun 1 2012, In : Research in Veterinary Science. 92, 3, p. 408-413 6 p.

Research output: Contribution to journalArticle

36 Scopus citations

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

Liu, S., Zhang, Y., Zhou, Z., Waldbieser, G., Sun, F., Lu, J., Zhang, J., Jiang, Y., Zhang, H., Wang, X., Rajendran, K. V., Khoo, L., Kucuktas, H., Peatman, E. & Liu, Z., Jan 16 2012, In : BMC Genomics. 13, 1, 595.

Research output: Contribution to journalArticle

92 Scopus citations

Molecular characterization of three L-type lectin genes from channel catfish, Ictalurus punctatus and their responses to Edwardsiella ictaluri challenge

Zhang, H., Peatman, E., Liu, H., Feng, T., Chen, L. & Liu, Z., Apr 2012, In : Fish and Shellfish Immunology. 32, 4, p. 598-608 11 p.

Research output: Contribution to journalArticle

21 Scopus citations

Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs)

Rajendran, K. V., Zhang, J., Liu, S., Peatman, E., Kucuktas, H., Wang, X., Liu, H., Wood, T., Terhune, J. & Liu, Z., Jul 1 2012, In : Developmental and Comparative Immunology. 37, 3-4, p. 381-389 9 p.

Research output: Contribution to journalArticle

71 Scopus citations

Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors

Rajendran, K. V., Zhang, J., Liu, S., Kucuktas, H., Wang, X., Liu, H., Sha, Z., Terhune, J., Peatman, E. & Liu, Z., May 1 2012, In : Developmental and Comparative Immunology. 37, 1, p. 77-86 10 p.

Research output: Contribution to journalArticle

58 Scopus citations

Profiling of gene duplication patterns of sequenced teleost genomes: Evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

Lu, J., Peatman, E., Tang, H., Lewis, J. & Liu, Z., Jun 15 2012, In : BMC Genomics. 13, 1, 246.

Research output: Contribution to journalArticle

51 Scopus citations

Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:Unionidae), using an RNA-seq-based approach

Wang, R., Li, C., Stoeckel, J., Moyer, G., Liu, Z. & Peatman, E., Sep 2012, In : Freshwater Science. 31, 3, p. 695-708 14 p.

Research output: Contribution to journalArticle

21 Scopus citations

RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus

Li, C., Zhang, Y., Wang, R., Lu, J., Nandi, S., Mohanty, S., Terhune, J., Liu, Z. & Peatman, E., May 2012, In : Fish and Shellfish Immunology. 32, 5, p. 816-827 12 p.

Research output: Contribution to journalArticle

138 Scopus citations

Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map

Ninwichian, P., Peatman, E., Liu, H., Kucuktas, H., Somridhivej, B., Liu, S., Li, P., Jiang, Y., Sha, Z., Kaltenboeck, L., Abernathy, J. W., Wang, W., Chen, F., Lee, Y., Wong, L., Wang, S., Lu, J. & Liu, Z., Oct 1 2012, In : G3: Genes, Genomes, Genetics. 2, 10, p. 1233-1241 9 p.

Research output: Contribution to journalArticle

36 Scopus citations

Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection

Sun, F., Peatman, E., Li, C., Liu, S., Jiang, Y., Zhou, Z. & Liu, Z., Sep 1 2012, In : Developmental and Comparative Immunology. 38, 1, p. 169-180 12 p.

Research output: Contribution to journalArticle

120 Scopus citations
2011

A pilot study for channel catfish whole genome sequencing and de novo assembly

Jiang, Y., Lu, J., Peatman, E., Kucuktas, H., Liu, S., Wang, S., Sun, F. & Liu, Z., Dec 22 2011, In : BMC Genomics. 12, 629.

Research output: Contribution to journalArticle

22 Scopus citations
21 Scopus citations

DNA barcoding of catfish: Species authentication and phylogenetic assessment

Wong, L. L., Peatman, E., Lu, J., Kucuktas, H., He, S., Zhou, C., Na-nakorn, U. & Liu, Z., Mar 21 2011, In : PloS one. 6, 3, e17812.

Research output: Contribution to journalArticle

51 Scopus citations

Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence

Abernathy, J., Xu, D. H., Peatman, E., Kucuktas, H., Klesius, P. & Liu, Z., Dec 2011, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 6, 4, p. 382-392 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Liu, S., Zhou, Z., Lu, J., Sun, F., Wang, S., Liu, H., Jiang, Y., Kucuktas, H., Kaltenboeck, L., Peatman, E. & Liu, Z., Jan 21 2011, In : BMC Genomics. 12, 53.

Research output: Contribution to journalArticle

107 Scopus citations

Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses

Niu, D., Peatman, E., Liu, H., Lu, J., Kucuktas, H., Liu, S., Sun, F., Zhang, H., Feng, T., Zhou, Z., Terhune, J., Waldbieser, G., Li, J. & Liu, Z., May 1 2011, In : Developmental and Comparative Immunology. 35, 5, p. 568-579 12 p.

Research output: Contribution to journalArticle

27 Scopus citations

Molecular characterization and expression analysis of the channel catfish cathepsin D genes

Feng, T., Zhang, H., Liu, H., Zhou, Z., Niu, D., Wong, L., Kucuktas, H., Liu, X., Peatman, E. & Liu, Z., Jul 2011, In : Fish and Shellfish Immunology. 31, 1, p. 164-169 6 p.

Research output: Contribution to journalArticle

28 Scopus citations

Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus)

Liu, H., Peatman, E., Wang, W., Abernathy, J., Liu, S., Kucuktas, H., Lu, J., Xu, D. H., Klesius, P., Waldbieser, G. & Liu, Z., Mar 1 2011, In : Developmental and Comparative Immunology. 35, 3, p. 267-272 6 p.

Research output: Contribution to journalArticle

27 Scopus citations

Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus)

Liu, H., Peatman, E., Wang, W., Abernathy, J., Liu, S., Kucuktas, H., Terhune, J., Xu, D. H., Klesius, P. & Liu, Z., Mar 2011, In : Fish and Shellfish Immunology. 30, 3, p. 992-997 6 p.

Research output: Contribution to journalArticle

16 Scopus citations

Proliferating cells in suborbital tissue drive eye migration in flatfish

Bao, B., Ke, Z., Xing, J., Peatman, E., Liu, Z., Xie, C., Xu, B., Gai, J., Gong, X., Yang, G., Jiang, Y., Tang, W. & Ren, D., Mar 1 2011, In : Developmental Biology. 351, 1, p. 200-207 8 p.

Research output: Contribution to journalArticle

29 Scopus citations

Susceptibility of channel catfish, blue catfish and channel×blue catfish hybrid to Ichthyophthirius multifiliis

Xu, D. H., Klesius, P. H., Peatman, E. & Liu, Z., Feb 3 2011, In : Aquaculture. 311, 1-4, p. 25-30 6 p.

Research output: Contribution to journalArticle

9 Scopus citations

The catfish genome database cBARBEL: An informatic platform for genome biology of ictalurid catfish

Lu, J., Peatman, E., Yang, Q., Wang, S., Hu, Z., Reecy, J., Kucuktas, H. & Liu, Z., Jan 1 2011, In : Nucleic acids research. 39, SUPPL. 1, p. D815-D821

Research output: Contribution to journalArticle

27 Scopus citations
2010

Alternative splicing in teleost fish genomes: Same-species and cross-species analysis and comparisons

Lu, J., Peatman, E., Wang, W., Yang, Q., Abernathy, J., Wang, S., Kucuktas, H. & Liu, Z., Jun 1 2010, In : Molecular Genetics and Genomics. 283, 6, p. 531-539 9 p.

Research output: Contribution to journalArticle

35 Scopus citations

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

Wang, S., Peatman, E., Abernathy, J., Waldbieser, G., Lindquist, E., Richardson, P., Lucas, S., Wang, M., Li, P., Thimmapuram, J., Liu, L., Vullaganti, D., Kucuktas, H., Murdock, C., Small, B. C., Wilson, M., Liu, H., Jiang, Y., Lee, Y., Chen, F. & 21 others, Lu, J., Wang, W., Xu, P., Somridhivej, B., Baoprasertkul, P., Quilang, J., Sha, Z., Bao, B., Wang, Y., Wang, Q., Takano, T., Nandi, S., Liu, S., Wong, L., Kaltenboeck, L., Quiniou, S., Bengten, E., Miller, N., Trant, J., Rokhsar, D. & Liu, Z., Jan 22 2010, In : Genome biology. 11, 1, r8.

Research output: Contribution to journalArticle

74 Scopus citations

Generation and analysis of 10 000 ESTs from the half-smooth tongue sole Cynoglossus semilaevis and identification of microsatellite and SNP markers

Sha, Z., Wang, S., Zhuang, Z., Wang, Q., Wang, Q., Li, P., Ding, H., Wang, N., Liu, Z. & Chen, S., Apr 1 2010, In : Journal of Fish Biology. 76, 5, p. 1190-1204 15 p.

Research output: Contribution to journalArticle

24 Scopus citations

Generation and analysis of ESTs from the Grass carp, Ctenopharyngodon idellus

Xu, B., Wang, S., Jiang, Y., Yang, L., Li, P., Xie, C., Xing, J., Ke, Z., Li, J., Gai, J., Yang, G., Bao, B. & Liu, Z., Oct 1 2010, In : Animal Biotechnology. 21, 4, p. 217-225 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genetic differentiation between natural and hatchery stocks of Japanese scallop (Mizuhopecten yessoensis) as revealed by AFLP analysis.

Liu, W. D., Li, H. J., Bao, X. B., Gao, X. G., Li, Y. F., He, C. B. & Liu, Z. J., 2010, In : International journal of molecular sciences. 11, 10, p. 3933-3941 9 p.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)

Chen, F., Lee, Y., Jiang, Y., Wang, S., Peatman, E., Abernathy, J., Liu, H., Liu, S., Kucuktas, H., Ke, C. & Liu, Z., Aug 13 2010, In : PloS one. 5, 7, e11546.

Research output: Contribution to journalArticle

35 Scopus citations

Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus)

Jiang, Y., Abernathy, J. W., Peatman, E., Liu, H., Wang, S., Xu, D. H., Kucuktas, H., Klesius, P. & Liu, Z., May 1 2010, In : Developmental and Comparative Immunology. 34, 5, p. 590-597 8 p.

Research output: Contribution to journalArticle

12 Scopus citations

Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge

Wang, S., Peatman, E., Liu, H., Bushek, D., Ford, S. E., Kucuktas, H., Quilang, J., Li, P., Wallace, R., Wang, Y., Guo, X. & Liu, Z., Dec 2010, In : Fish and Shellfish Immunology. 29, 6, p. 921-929 9 p.

Research output: Contribution to journalArticle

52 Scopus citations

Molecular and cellular evidence for biased mitotic gene conversion in hybrid scallop

Wang, S., Zhang, L., Hu, J., Bao, Z. & Liu, Z., Feb 16 2010, In : BMC Evolutionary Biology. 10, 1, 6.

Research output: Contribution to journalArticle

9 Scopus citations

Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment

Liu, H., Takano, T., Peatman, E., Abernathy, J., Wang, S., Sha, Z., Kucuktas, H., Xu, D. H., Klesius, P. & Liu, Z., Jul 1 2010, In : Journal of Experimental Zoology Part A: Ecological Genetics and Physiology. 313 A, 6, p. 359-368 10 p.

Research output: Contribution to journalArticle

24 Scopus citations

Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus

Liu, H., Takano, T., Abernathy, J., Wang, S., Sha, Z., Jiang, Y., Terhune, J., Kucuktas, H., Peatman, E. & Liu, Z., Jan 2010, In : Fish and Shellfish Immunology. 28, 1, p. 159-166 8 p.

Research output: Contribution to journalArticle

38 Scopus citations
2009

Comparative analysis of catfish BAC end sequences with the zebrafish genome

Liu, H., Jiang, Y., Wang, S., Ninwichian, P., Somridhivej, B., Xu, P., Abernathy, J., Kucuktas, H. & Liu, Z., Dec 10 2009, In : BMC Genomics. 10, 592.

Research output: Contribution to journalArticle

35 Scopus citations

Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers

Kucuktas, H., Wang, S., Li, P., He, C., Xu, P., Sha, Z., Liu, H., Jiang, Y., Baoprasertkul, P., Somridhivej, B., Wang, Y., Abernathy, J., Guo, X., Liu, L., Muir, W. & Liu, Z., Apr 1 2009, In : Genetics. 181, 4, p. 1649-1660 12 p.

Research output: Contribution to journalArticle

94 Scopus citations

Molecular characteristics of an immobilization antigen gene of the fish-parasitic protozoan Ichthyophthirius multifiliis strain ARS-6

Xu, D. H., Panangala, V. S., Van Santen, V. L., Dybvig, K., Abernathy, J. W., Klesius, P. H., Liu, Z. & Russo, R., Nov 1 2009, In : Aquaculture Research. 40, 16, p. 1884-1892 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

Molecular characterization of complement factor I reveals constitutive expression in channel catfish

Abernathy, J. W., Lu, J., Liu, H., Kucuktas, H. & Liu, Z., Sep 2009, In : Fish and Shellfish Immunology. 27, 3, p. 529-534 6 p.

Research output: Contribution to journalArticle

14 Scopus citations

NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish

Sha, Z., Abernathy, J. W., Wang, S., Li, P., Kucuktas, H., Liu, H., Peatman, E. & Liu, Z., Sep 1 2009, In : Developmental and Comparative Immunology. 33, 9, p. 991-999 9 p.

Research output: Contribution to journalArticle

81 Scopus citations

Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA

Abernathy, J. W., Xu, D. H., Li, P., Klesius, P., Kucuktas, H. & Liu, Z., Sep 2009, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 4, 3, p. 179-186 8 p.

Research output: Contribution to journalArticle

4 Scopus citations
2008

Characterization, polymorphism assessment, and database construction for microsatellites from BAC end sequences of channel catfish (Ictalurus punctatus): A resource for integration of linkage and physical maps

Somridhivej, B., Wang, S., Sha, Z., Liu, H., Quilang, J., Xu, P., Li, P., Hu, Z. & Liu, Z., Mar 31 2008, In : Aquaculture. 275, 1-4, p. 76-80 5 p.

Research output: Contribution to journalArticle

30 Scopus citations

Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri

Peatman, E., Terhune, J., Baoprasertkul, P., Xu, P., Nandi, S., Wang, S., Somridhivej, B., Kucuktas, H., Li, P., Dunham, R. & Liu, Z., Jan 1 2008, In : Molecular Immunology. 45, 2, p. 553-566 14 p.

Research output: Contribution to journalArticle

111 Scopus citations

Quality assessment parameters for EST-derived SNPs from catfish

Wang, S., Sha, Z., Sonstegard, T. S., Liu, H., Xu, P., Somridhivej, B., Peatman, E., Kucuktas, H. & Liu, Z., Sep 30 2008, In : BMC Genomics. 9, 450.

Research output: Contribution to journalArticle

83 Scopus citations

Sequence and organization of the complete mitochondrial genomes of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri)

He, C., Han, J., Ge, L., Zhou, Z., Gao, X., Mu, Y., Liu, W., Cao, J. & Liu, Z., Jun 1 2008, In : DNA Sequence - Journal of DNA Sequencing and Mapping. 19, 3, p. 246-255 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri

Takano, T., Sha, Z., Peatman, E., Terhune, J., Liu, H., Kucuktas, H., Li, P., Edholm, E. S., Wilson, M. & Liu, Z., Jan 1 2008, In : Developmental and Comparative Immunology. 32, 6, p. 693-705 13 p.

Research output: Contribution to journalArticle

57 Scopus citations

The warm temperature acclimation protein Wap65 as an immune response gene: Its duplicates are differentially regulated by temperature and bacterial infections

Sha, Z., Xu, P., Takano, T., Liu, H., Terhune, J. & Liu, Z., Mar 1 2008, In : Molecular Immunology. 45, 5, p. 1458-1469 12 p.

Research output: Contribution to journalArticle

56 Scopus citations
2007

A BAC-based physical map of the channel catfish genome

Xu, P., Wang, S., Liu, L., Thorsen, J., Kucuktas, H. & Liu, Z., Sep 1 2007, In : Genomics. 90, 3, p. 380-388 9 p.

Research output: Contribution to journalArticle

60 Scopus citations

A cDNA microarray for Crassostrea virginica and C. gigas

Jenny, M. J., Chapman, R. W., Mancia, A., Chen, Y. A., McKillen, D. J., Trent, H., Lang, P., Escoubas, J. M., Bachere, E., Boulo, V., Liu, Z. J., Gross, P. S., Cunningham, C., Cupit, P. M., Tanguy, A., Guo, X., Moraga, D., Boutet, I., Huvet, A., De Guise, S. & 2 others, Almeida, J. S. & Warr, G. W., Oct 1 2007, In : Marine Biotechnology. 9, 5, p. 577-591 15 p.

Research output: Contribution to journalArticle

56 Scopus citations

Assessing genetic diversity of populations of topmouth culter (Culter alburnus) in China using AFLP markers

Wang, W., Chen, L., Yang, P., Hou, L., He, C., Gu, Z. & Liu, Z., Oct 1 2007, In : Biochemical Systematics and Ecology. 35, 10, p. 662-669 8 p.

Research output: Contribution to journalArticle

36 Scopus citations

Characterization of a BAC library from channel catfish Ictalurus punctatus: Indications of high levels of chromosomal reshuffling among teleost genomes

Wang, S., Xu, P., Thorsen, J., Zhu, B., De Jong, P. J., Waldbieser, G., Kucuktas, H. & Liu, Z., Dec 1 2007, In : Marine Biotechnology. 9, 6, p. 701-711 11 p.

Research output: Contribution to journalArticle

35 Scopus citations

Divergent Toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21

Baoprasertkul, P., Xu, P., Peatman, E., Kucuktas, H. & Liu, Z., Dec 2007, In : Fish and Shellfish Immunology. 23, 6, p. 1218-1230 13 p.

Research output: Contribution to journalArticle

89 Scopus citations