• 9308 Citations
  • 56 h-Index
1986 …2022

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2016

Ribosomal protein genes are highly enriched among genes with allele-specific expression in the interspecific F1 hybrid catfish

Chen, A., Wang, R., Liu, S., Peatman, E., Sun, L., Bao, L., Jiang, C., Li, C., Li, Y., Zeng, Q. & Liu, Z. J., Jun 1 2016, In : Molecular Genetics and Genomics. 291, 3, p. 1083-1093 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Septin genes in channel catfish (Ictalurus punctatus) and their involvement in disease defense responses

Fu, Q., Li, Y., Yang, Y., Li, C., Yao, J., Zeng, Q., Qin, Z., Liu, S., Li, D. & Liu, Z. J., Feb 1 2016, In : Fish and Shellfish Immunology. 49, p. 110-121 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

Liu, Z. J., Liu, S., Yao, J., Bao, L., Zhang, J., Li, Y., Jiang, C., Sun, L., Wang, R., Zhang, Y., Zhou, T., Zeng, Q., Fu, Q., Gao, S., Li, N., Koren, S., Jiang, Y., Zimin, A., Xu, P., Phillippy, A. M. & 32 others, Geng, X., Song, L., Sun, F., Li, C., Wang, X., Chen, A., Jin, Y., Yuan, Z., Yang, Y., Tan, S., Peatman, E., Lu, J., Qin, Z., Dunham, R., Li, Z., Sonstegard, T., Feng, J., Danzmann, R. G., Schroeder, S., Scheffler, B., Duke, M. V., Ballard, L., Kucuktas, H., Kaltenboeck, L., Liu, H., Armbruster, J., Xie, Y., Kirby, M. L., Tian, Y., Flanagan, M. E., Mu, W. & Waldbieser, G. C., Jun 2 2016, In : Nature Communications. 7, 11757.

Research output: Contribution to journalArticle

123 Scopus citations

The complete mitochondrial genome of the armored catfish, Hypostomus plecostomus (Siluriformes: Loricariidae)

Liu, S., Zhang, J., Yao, J. & Liu, Z. J., May 1 2016, In : Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis. 27, 3, p. 1908-1909 2 p.

Research output: Contribution to journalArticle

2 Scopus citations

Transcriptome display during testicular differentiation of channel catfish (Ictalurus punctatus) as revealed by RNA-seq analysis

Zeng, Q., Liu, S., Yao, J., Zhang, Y., Yuan, Z., Jiang, C., Chen, A., Fu, Q., Su, B., Dunham, R. & Liu, Z. J., Jul 1 2016, In : Biology of Reproduction. 95, 1, 19.

Research output: Contribution to journalArticle

17 Scopus citations
2015

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

Geng, X., Sha, J., Liu, S., Bao, L., Zhang, J., Wang, R., Yao, J., Li, C., Feng, J., Sun, F., Sun, L., Jiang, C., Zhang, Y., Chen, A., Dunham, R., Zhi, D. & Liu, Z. J., Mar 17 2015, In : BMC Genomics. 16, 1, 196.

Research output: Contribution to journalArticle

60 Scopus citations
21 Scopus citations

Complement regulatory protein genes in channel catfish and their involvement in disease defense response

Jiang, C., Zhang, J., Yao, J., Liu, S., Li, Y., Song, L., Li, C., Wang, X. & Liu, Z. J., Nov 1 2015, In : Developmental and Comparative Immunology. 53, 1, p. 33-41 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

Li, Y., Liu, S., Qin, Z., Waldbieser, G., Wang, R., Sun, L., Bao, L., Danzmann, R. G., Dunham, R. & Liu, Z. J., 2015, In : DNA Research. 22, 1, p. 39-52 14 p.

Research output: Contribution to journalArticle

42 Scopus citations

Expression of tumor suppressor genes in channel catfish after bacterial infections

Mu, W., Yao, J., Zhang, J., Liu, S., Wen, H., Feng, J. & Liu, Z. J., Jan 1 2015, In : Developmental and Comparative Immunology. 48, 1, p. 171-177 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Hsp90, Hsp60 and sHsp families of heat shock protein genes in channel catfish and their expression after bacterial infections

Xie, Y., Song, L., Weng, Z., Liu, S. & Liu, Z. J., Jun 1 2015, In : Fish and Shellfish Immunology. 44, 2, p. 642-651 10 p.

Research output: Contribution to journalArticle

42 Scopus citations

Identification, phylogeny and expression analysis of suppressors of cytokine signaling in channel catfish

Yao, J., Mu, W., Liu, S., Zhang, J., Wen, H. & Liu, Z. J., Apr 1 2015, In : Molecular Immunology. 64, 2, p. 276-284 9 p.

Research output: Contribution to journalArticle

20 Scopus citations

Identification and characterization of MicroRNAs from longitudinal muscle and respiratory tree in sea cucumber (Apostichopus japonicus) using high-throughput sequencing

Wang, H., Liu, S., Cui, J., Li, C., Hu, Y., Zhou, W., Chang, Y., Qiu, X., Liu, Z. J. & Wang, X., Aug 5 2015, In : PLoS One. 10, 8, e0134899.

Research output: Contribution to journalArticle

11 Scopus citations
3 Scopus citations

Molecular characterization, phylogenetic analysis and expression profiling of myoglobin and cytoglobin genes in response to heat stress in channel catfish Ictalurus punctatus

Feng, J. B., Liu, S. K., Wang, R. J., Zhang, J. R., Wang, X. L., Kaltenboeck, L., Li, J. L. & Liu, Z. J., Feb 1 2015, In : Journal of Fish Biology. 86, 2, p. 592-604 13 p.

Research output: Contribution to journalArticle

4 Scopus citations

Suppression and restoration of primordial germ cell marker gene expression in channel catfish, Ictalurus punctatus, using knockdown constructs regulated by copper transport protein gene promoters: Potential for reversible transgenic sterilization

Su, B., Shang, M., Grewe, P. M., Patil, J. G., Peatman, E., Perera, D. A., Cheng, Q., Li, C., Weng, C. C., Li, P., Liu, Z. J. & Dunham, R. A., Dec 1 2015, In : Theriogenology. 84, 9, p. 1499-1512 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

The serpin superfamily in channel catfish: Identification, phylogenetic analysis and expression profiling in mucosal tissues after bacterial infections

Li, Y., Liu, S., Qin, Z., Yao, J., Jiang, C., Song, L., Dunham, R. & Liu, Z. J., Apr 1 2015, In : Developmental and Comparative Immunology. 49, 2, p. 267-277 11 p.

Research output: Contribution to journalArticle

12 Scopus citations
2014

Analysis of 52 Rab GTPases from channel catfish and their involvement in immune responses after bacterial infections

Wang, R., Zhang, Y., Liu, S., Li, C., Sun, L., Bao, L., Feng, J. & Liu, Z. J., 2014, In : Developmental and Comparative Immunology. 45, 1, p. 21-34 14 p.

Research output: Contribution to journalArticle

19 Scopus citations

Catfish species identification using lab-on-chip PCR-RFLP

Wong, L. L., Peatman, E., Kelly, L., Kucuktas, H., Na-Nakorn, U. & Liu, Z. J., Jan 2 2014, In : Journal of Aquatic Food Product Technology. 23, 1, p. 2-13 12 p.

Research output: Contribution to journalArticle

5 Scopus citations

Channel catfish hemoglobin genes: Identification, phylogenetic and syntenic analysis, and specific induction in response to heat stress

Feng, J., Liu, S., Wang, X., Wang, R., Zhang, J., Jiang, Y., Li, C., Kaltenboeck, L., Li, J. & Liu, Z. J., Mar 2014, In : Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 9, 1, p. 11-22 12 p.

Research output: Contribution to journalArticle

9 Scopus citations

Characterization and expression analysis of microRNAs in the tube foot of sea cucumber Apostichopus japonicus

Wang, H., Liu, S., Cui, J., Li, C., Qiu, X., Chang, Y., Liu, Z. J. & Wang, X., Nov 5 2014, In : PLoS One. 9, 11, e111820.

Research output: Contribution to journalArticle

10 Scopus citations

Development of strategies for integrated breeding, genetics and applied genomics for genetic improvement of aquatic organisms

Dunham, R. A., Taylor, J. F., Rise, M. L. & Liu, Z. J., Jan 20 2014, In : Aquaculture. 420-421

Research output: Contribution to journalArticle

6 Scopus citations

Development of the catfish 250K SNP array for genome-wide association studies

Liu, S., Sun, L., Li, Y., Sun, F., Jiang, Y., Zhang, Y., Zhang, J., Feng, J., Kaltenboeck, L., Kucuktas, H. & Liu, Z. J., Mar 10 2014, In : BMC Research Notes. 7, 1, 135.

Research output: Contribution to journalArticle

49 Scopus citations

Expression of nitric oxide synthase (NOS) genes in channel catfish is highly regulated and time dependent after bacterial challenges

Yao, J., Li, C., Zhang, J., Liu, S., Feng, J., Wang, R., Li, Y., Jiang, C., Song, L., Chen, A. & Liu, Z. J., 2014, In : Developmental and Comparative Immunology. 45, 1, p. 74-86 13 p.

Research output: Contribution to journalArticle

28 Scopus citations

Generation of physical map contig-specific sequences

Jiang, Y., Xu, P. & Liu, Z. J., 2014, In : Frontiers in Genetics. 5, JUL, Article 243.

Research output: Contribution to journalArticle

1 Scopus citations

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

Xu, P., Zhang, X., Wang, X., Li, J., Liu, G., Kuang, Y., Xu, J., Zheng, X., Ren, L., Wang, G., Zhang, Y., Huo, L., Zhao, Z., Cao, D., Lu, C., Li, C., Zhou, Y., Liu, Z. J., Fan, Z., Shan, G. & 33 others, Li, X., Wu, S., Song, L., Hou, G., Jiang, Y., Jeney, Z., Yu, D., Wang, L., Shao, C., Song, L., Sun, J., Ji, P., Wang, J., Li, Q., Xu, L., Sun, F., Feng, J., Wang, C., Wang, S., Wang, B., Li, Y., Zhu, Y., Xue, W., Zhao, L., Wang, J., Gu, Y., Lv, W., Wu, K., Xiao, J., Wu, J., Zhang, Z., Yu, J. & Sun, X., Nov 5 2014, In : Nature Genetics. 46, 11, p. 1212-1219 8 p.

Research output: Contribution to journalArticle

254 Scopus citations

Genome-wide identification of Hsp40 genes in channel catfish and their regulated expression after bacterial infection

Song, L., Zhang, J., Li, C., Yao, J., Jiang, C., Li, Y., Liu, S. & Liu, Z. J., Dec 26 2014, In : PLoS One. 9, 12, e115752.

Research output: Contribution to journalArticle

16 Scopus citations

Growth of channel catfish (Ictalurus punctatus), blue catfish (I. furcatus), and their F1, F2, F3, and F1reciprocal backcross hybrids in earthen ponds

Argue, B. J., Kuhlers, D. L., Liu, Z. J. & Dunham, R. A., Oct 1 2014, In : Journal of Animal Science. 92, 10, p. 4297-4305 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

Identification and analysis of genome-wide SNPs provide insight into signatures of selection and domestication in channel catfish (Ictalurus punctatus)

Sun, L., Liu, S., Wang, R., Jiang, Y., Zhang, Y., Zhang, J., Bao, L., Kaltenboeck, L., Dunham, R., Waldbieser, G. & Liu, Z. J., Oct 14 2014, In : PLoS One. 9, 10, e109666.

Research output: Contribution to journalArticle

25 Scopus citations

Pathogen recognition receptors in channel catfish: IV. Identification, phylogeny and expression analysis of peptidoglycan recognition proteins

Sun, L., Liu, S., Wang, R., Li, C., Zhang, J. & Liu, Z. J., 2014, In : Developmental and Comparative Immunology. 46, 2, p. 291-299 9 p.

Research output: Contribution to journalArticle

20 Scopus citations

Quantitative trait loci map for growth and morphometric traits using a channel catfish × blue catfish interspecific hybrid system

Hutson, A. M., Liu, Z. J., Kucuktas, H., Umali-Maceina, G., Su, B. & Dunham, R. A., 2014, In : Journal of Animal Science. 92, 5, p. 1850-1865 16 p.

Research output: Contribution to journalArticle

8 Scopus citations

SNP discovery from transcriptome of the swimbladder of Takifugu rubripes

Cui, J., Wang, H., Liu, S., Zhu, L., Qiu, X., Jiang, Z., Wang, X. & Liu, Z. J., Mar 20 2014, In : PLoS One. 9, 3, e92502.

Research output: Contribution to journalArticle

14 Scopus citations

The cytochrome P450 genes of channel catfish: Their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq data sets

Zhang, J., Yao, J., Wang, R., Zhang, Y., Liu, S., Sun, L., Jiang, Y., Feng, J., Liu, N., Nelson, D., Waldbieser, G. & Liu, Z. J., 2014, In : Biochimica et Biophysica Acta - General Subjects. 1840, 9, p. 2813-2828 16 p.

Research output: Contribution to journalArticle

17 Scopus citations

Transciptome analysis of the gill and swimbladder of Takifugu rubripes by RNA-Seq

Cui, J., Liu, S., Zhang, B., Wang, H., Sun, H., Song, S., Qiu, X., Liu, Y., Wang, X., Jiang, Z. & Liu, Z. J., Jan 16 2014, In : PLoS One. 9, 1, e85505.

Research output: Contribution to journalArticle

22 Scopus citations
40 Scopus citations
2013

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

Wang, R., Sun, L., Bao, L., Zhang, J., Jiang, Y., Yao, J., Song, L., Feng, J., Liu, S. & Liu, Z. J., Dec 30 2013, In : BMC Genomics. 14, 1, 929.

Research output: Contribution to journalArticle

43 Scopus citations

Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements

Zhang, Y., Liu, S., Lu, J., Jiang, Y., Gao, X., Ninwichian, P., Li, C., Waldbieser, G. & Liu, Z. J., Jun 10 2013, In : BMC Genomics. 14, 1, 387.

Research output: Contribution to journalArticle

13 Scopus citations

Development of Molecular Resources for an Intertidal Clam, Sinonovacula constricta, Using 454 Transcriptome Sequencing

Niu, D., Wang, L., Sun, F., Liu, Z. J. & Li, J., Jul 25 2013, In : PLoS One. 8, 7, e67456.

Research output: Contribution to journalArticle

33 Scopus citations

Effect of Nutrient Restriction and Re-Feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus)

Preziosa, E., Liu, S., Terova, G., Gao, X., Liu, H., Kucuktas, H., Terhune, J. & Liu, Z. J., Mar 19 2013, In : PLoS One. 8, 3, e59404.

Research output: Contribution to journalArticle

12 Scopus citations

Four lysozymes (one c-type and three g-type) in catfish are drastically butdifferentially induced after bacterial infection

Wang, R., Feng, J., Li, C., Liu, S., Zhang, Y. & Liu, Z. J., Jul 2013, In : Fish and Shellfish Immunology. 35, 1, p. 136-145 10 p.

Research output: Contribution to journalArticle

27 Scopus citations

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding

Jiang, Y., Ninwichian, P., Liu, S., Zhang, J., Kucuktas, H., Sun, F., Kaltenboeck, L., Sun, L., Bao, L. & Liu, Z. J., Oct 24 2013, In : PLoS One. 8, 10, e78872.

Research output: Contribution to journalArticle

4 Scopus citations

Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes

Liu, S., Li, Q. & Liu, Z. J., May 16 2013, In : PLoS One. 8, 5, e63895.

Research output: Contribution to journalArticle

36 Scopus citations

Identification of reproduction-related genes and SSR-markers through expressed sequence tags analysis of a monsoon breeding carp rohu, labeo rohita (hamilton)

Sahu, D. K., Panda, S. P., Panda, S., Das, P., Meher, P. K., Hazra, R. K., Peatman, E., Liu, Z. J., Eknath, A. E. & Nandi, S., Jul 15 2013, In : Gene. 524, 1, p. 1-14 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome

Sun, F., Liu, S., Gao, X., Jiang, Y., Perera, D., Wang, X., Li, C., Sun, L., Zhang, J., Kaltenboeck, L., Dunham, R. & Liu, Z. J., Jul 12 2013, In : PLoS One. 8, 7, e68452.

Research output: Contribution to journalArticle

44 Scopus citations

Pathogen recognition receptors in channel catfish: III Phylogeny and expression analysis of Toll-like receptors

Zhang, J., Liu, S., Rajendran, K. V., Sun, L., Zhang, Y., Sun, F., Kucuktas, H., Liu, H. & Liu, Z. J., Jun 2013, In : Developmental and Comparative Immunology. 40, 2, p. 185-194 10 p.

Research output: Contribution to journalArticle

65 Scopus citations

RNA-Seq analysis reveals genes associated with resistance to Taura syndrome virus (TSV) in the Pacific white shrimp Litopenaeus vannamei

Sookruksawong, S., Sun, F., Liu, Z. J. & Tassanakajon, A., Dec 2013, In : Developmental and Comparative Immunology. 41, 4, p. 523-533 11 p.

Research output: Contribution to journalArticle

41 Scopus citations

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

Liu, S., Wang, X., Sun, F., Zhang, J., Feng, J., Liu, H., Rajendran, K. V., Sun, L., Zhang, Y., Jiang, Y., Peatman, E., Kaltenboeck, L., Kucuktas, H. & Liu, Z. J., Jun 17 2013, In : Physiological Genomics. 45, 12, p. 462-476 15 p.

Research output: Contribution to journalArticle

74 Scopus citations

Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species

Jiang, Y., Gao, X., Liu, S., Zhang, Y., Liu, H., Sun, F., Bao, L., Waldbieser, G. & Liu, Z. J., Nov 11 2013, In : BMC Genomics. 14, 1, 780.

Research output: Contribution to journalArticle

13 Scopus citations
2012

Alternative complement pathway of channel catfish (Ictalurus punctatus): Molecular characterization, mapping and expression analysis of factors Bf/C2 and Df

Zhou, Z., Liu, H., Liu, S., Sun, F., Peatman, E., Kucuktas, H., Kaltenboeck, L., Feng, T., Zhang, H., Niu, D., Lu, J., Waldbieser, G. & Liu, Z. J., Jan 2012, In : Fish and Shellfish Immunology. 32, 1, p. 186-195 10 p.

Research output: Contribution to journalArticle

18 Scopus citations

Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus)

Zhang, H., Peatman, E., Liu, H., Niu, D., Feng, T., Kucuktas, H., Waldbieser, G., Chen, L. & Liu, Z. J., Jun 2012, In : Research in Veterinary Science. 92, 3, p. 408-413 6 p.

Research output: Contribution to journalArticle

36 Scopus citations