• 1815 Citations
  • 17 h-Index
1988 …2019
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Research Output 1988 2019

  • 1815 Citations
  • 17 h-Index
  • 34 Article
  • 7 Conference contribution
Article
427 Citations (Scopus)

Agrobacterium-mediated transformation of Fusarium oxysporum: An efficient tool for insertional mutagenesis and gene transfer

Mullins, E. D., Chen, X., Romaine, P., Raina, R., Geiser, D. M. & Kang, S., 2001, In : Phytopathology. 91, 2, p. 173-180 8 p.

Research output: Contribution to journalArticle

insertional mutagenesis
Fusarium oxysporum
Agrobacterium radiobacter
Agrobacterium
gene transfer
8 Citations (Scopus)
Plant Proteins
transcriptional activation
Transcription
Transcriptional Activation
Assays

A motif extraction algorithm based on hashing and modulo-4 arithmetic.

Sheng, H., Mehrotra, K., Mohan, C. K. & Raina, R., 2008, In : International Journal of Computational Biology and Drug Design. 1, 2, p. 185-199 15 p.

Research output: Contribution to journalArticle

Genetic Promoter Regions
Genes
Datasets
5 Citations (Scopus)

Analysis of upstream activation of the vnfH promoter of Azotobacter vinelandii

Bageshwar, U. K., Raina, R., Choudhury, N. R. & Das, H. K., 1998, In : Canadian Journal of Microbiology. 44, 5, p. 405-415 11 p.

Research output: Contribution to journalArticle

Azotobacter vinelandii
Activation Analysis
Introns
Nucleotides
Chemical activation
79 Citations (Scopus)

Arabidopsis GH3-LIKE DEFENSE GENE 1 is required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae

Jagadeeswaran, G., Raina, S., Acharya, B. R., Maqbool, S. B., Mosher, S. L., Appel, H. M., Schultz, J. C., Klessig, D. F. & Raina, R., Jul 2007, In : Plant Journal. 51, 2, p. 234-246 13 p.

Research output: Contribution to journalArticle

Pseudomonas syringae
Salicylic Acid
Arabidopsis
salicylic acid
Genes
3 Citations (Scopus)

Characterization of a spontaneous mutant of Azotobacter vinelandii in which vanadium-dependent nitrogen fixation is not inhibited by molybdenum

Bageshwar, U. K., Raina, R. & Das, H. K., May 1 1998, In : FEMS Microbiology Letters. 162, 1, p. 161-167 7 p.

Research output: Contribution to journalArticle

Azotobacter vinelandii
Vanadium
Nitrogen Fixation
Molybdenum
Cultured Cells
27 Citations (Scopus)
Azotobacter vinelandii
Nitrogenase
Vanadium
Ferredoxins
Genes
165 Citations (Scopus)

Characterizing the stress/defense transcriptome of Arabidopsis.

Mahalingam, R., Gomez-Buitrago, A., Eckardt, N., Shah, N., Guevara-Garcia, A., Day, P., Raina, R. & Fedoroff, N. V., 2003, In : Genome Biology. 4, 3

Research output: Contribution to journalArticle

Transcriptome
Arabidopsis
transcriptome
Genes
gene
21 Citations (Scopus)

Concerted formation of macromolecular Suppressor-mutator transposition complexes

Raina, R., Schläppi, M., Karunanandaa, B., Elhofy, A. & Fedoroff, N., Jul 21 1998, In : Proceedings of the National Academy of Sciences of the United States of America. 95, 15, p. 8526-8531 6 p.

Research output: Contribution to journalArticle

Binding Sites
DNA
Proteins
Transition Elements
DNA-Binding Proteins
6 Citations (Scopus)
Azotobacter vinelandii
Vanadium
Nitrogen Fixation
Molybdenum
Tungsten
5 Citations (Scopus)

Defining the Metabolic Functions and Roles in Virulence of the rpoN1 and rpoN2 Genes in Ralstonia solanacearum GMI1000

Lundgren, B. R., Connolly, M. P., Choudhary, P., Brookins-Little, T. S., Chatterjee, S., Raina, R. & Nomura, C. T., Dec 1 2015, In : PLoS One. 10, 12, e0144852.

Research output: Contribution to journalArticle

Ralstonia solanacearum
Virulence
virulence
RNA Polymerase Sigma 54
Genes
87 Citations (Scopus)

Differential volatile emissions and salicylic acid levels from tobacco plants in response to different strains of Pseudomonas syringae

Huang, J., Cardoza, Y. J., Schmelz, E. A., Raina, R., Engelberth, J. & Tumlinson, J. H., Sep 1 2003, In : Planta. 217, 5, p. 767-775 9 p.

Research output: Contribution to journalArticle

Pseudomonas syringae
Salicylic Acid
salicylic acid
Tobacco
plant response
3 Citations (Scopus)
endophyte
nitrogen fixation
symbiont
endophytes
symbionts
3 Citations (Scopus)

Epigenetic mechanisms in the regulation of the maize Suppressor-mutator transposon.

Raina, R., Schläppi, M. & Fedoroff, N., 1998, In : Novartis Foundation Symposium. 214

Research output: Contribution to journalArticle

GC Rich Sequence
Epigenomics
Methylation
Zea mays
Activator Appliances
70 Citations (Scopus)

Epigenetic regulation of the maize Spm transposable element: Novel activation of a methylated promoter by TnpA

Schläppi, M., Raina, R. & Fedoroff, N., May 6 1994, In : Cell. 77, 3, p. 427-437 11 p.

Research output: Contribution to journalArticle

DNA Transposable Elements
Methylation
Epigenomics
Zea mays
Chemical activation
52 Citations (Scopus)

Epigenetic regulation of the maize Spm transposon

Fedoroff, N., Schläppi, M. & Raina, R., 1995, In : BioEssays. 17, 4, p. 291-297 7 p.

Research output: Contribution to journalArticle

Methylation
Transcription
Epigenomics
epigenetics
transposons
42 Citations (Scopus)

Extracellular fibrils of pathogenic yeast Cryptococcus gattii are important for ecological niche, murine virulence and human neutrophil interactions

Springer, D. J., Ren, P., Raina, R., Dong, Y., Behr, M. J., McEwen, B. F., Bowser, S. S., Samsonoff, W. A., Chaturvedi, S. & Chaturvedi, V., 2010, In : PLoS One. 5, 6, e10978.

Research output: Contribution to journalArticle

Cryptococcus gattii
Yeast
Virulence
neutrophils
niches
50 Citations (Scopus)

Grassland root communities: Species distributions and how they are linked to aboveground abundance

Frank, D. A., Pontes, A. W., Maine, E. M., Caruana, J., Raina, R., Raina, S. & Fridley, J. D., Nov 2010, In : Ecology. 91, 11, p. 3201-3209 9 p.

Research output: Contribution to journalArticle

biogeography
grasslands
grassland
soil depth
soil profiles
6 Citations (Scopus)
coenzyme Q10
Pseudomonas syringae
Pathogens
Arabidopsis
Oxidation-Reduction
5 Citations (Scopus)
Azospirillum brasilense
Agrobacterium tumefaciens
Defects

JMJ14 encoded H3K4 demethylase modulates immune responses by regulating defence gene expression and pipecolic acid levels

Li, D., Liu, R., Singh, D., Yuan, X., Kachroo, P. & Raina, R., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

pipecolic acid
immune response
Gene Expression
gene expression
systemic acquired resistance
8 Citations (Scopus)

JMJ27, an Arabidopsis H3K9 histone demethylase, modulates defense against Pseudomonas syringae and flowering time

Dutta, A., Choudhary, P., Caruana, J. & Raina, R., Sep 1 2017, In : Plant Journal. 91, 6, p. 1015-1028 14 p.

Research output: Contribution to journalArticle

Histone Demethylases
Pseudomonas syringae
Arabidopsis
histones
flowering
118 Citations (Scopus)

Light-dependent hypersensitive response and resistance signaling against Turnip Crinkle Virus in Arabidopsis

Chandra-Shekara, A. C., Gupte, M., Navarre, D., Raina, S., Raina, R., Klessig, D. & Kachroo, P., Feb 2006, In : Plant Journal. 45, 3, p. 320-334 15 p.

Research output: Contribution to journalArticle

Carmovirus
Turnip crinkle virus
hypersensitive response
Arabidopsis
Salicylic Acid
4 Citations (Scopus)

Loss of color pigmentation is maintained at high frequency in a monkey flower population

Twyford, A. D., Caola, A. M., Choudhary, P., Raina, R. & Friedman, J., Jan 1 2018, In : American Naturalist. 191, 1, p. 135-145 11 p.

Research output: Contribution to journalArticle

pigmentation
monkeys
flower
morphs
flowers
30 Citations (Scopus)

Maize Spm transposable element has an enhancer-insensitive promoter

Raina, R., Cook, D. & Fedoroff, N., Jul 1 1993, In : Proceedings of the National Academy of Sciences of the United States of America. 90, 13, p. 6355-6359 5 p.

Research output: Contribution to journalArticle

DNA Transposable Elements
Genetic Promoter Regions
Zea mays
Caulimovirus
TATA Box
299 Citations (Scopus)

Major signaling pathways modulate Arabidopsis glucosinolate accumulation and response to both phloem-feeding and chewing insects

Mewis, I., Appel, H. M., Hom, A., Raina, R. & Schultz, J. C., 2005, In : Plant Physiology. 138, 2, p. 1149-1162 14 p.

Research output: Contribution to journalArticle

Glucosinolates
Phloem
Mastication
glucosinolates
mastication
13 Citations (Scopus)

Negative effect of the 5'-untranslated leader sequence on Ac transposon promoter expression

Scortecci, K. C., Raina, R., Fedoroff, N. V. & Van Sluys, M. A., Aug 1999, In : Plant Molecular Biology. 40, 6, p. 935-944 10 p.

Research output: Contribution to journalArticle

DNA Transposable Elements
transposons
Genes
promoter regions
Mutagenesis
66 Citations (Scopus)

Overexpression of CRK13, an Arabidopsis cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae

Acharya, B. R., Raina, S., Maqbool, S. B., Jagadeeswaran, G., Mosher, S. L., Appel, H. M., Schultz, J. C., Klessig, D. F. & Raina, R., May 2007, In : Plant Journal. 50, 3, p. 488-499 12 p.

Research output: Contribution to journalArticle

Pseudomonas syringae
Arabidopsis
Cysteine
cysteine
phosphotransferases (kinases)
34 Citations (Scopus)

Preexisting systemic acquired resistance suppresses hypersensitive response-associated cell death in Arabidopsis hrl1 mutant

Devadas, S. K. & Raina, R., 2002, In : Plant Physiology. 128, 4, p. 1234-1244 11 p.

Research output: Contribution to journalArticle

systemic acquired resistance
hypersensitive response
Arabidopsis
cell death
Cell Death
39 Citations (Scopus)

The Arabidopsis gain-of-function mutant dll1 spontaneously develops lesions mimicking cell death associated with disease

Pilloff, R. K., Devadas, S. K., Enyedi, A. & Raina, R., 2002, In : Plant Journal. 30, 1, p. 61-70 10 p.

Research output: Contribution to journalArticle

lesions (plant)
Arabidopsis
cell death
Cell Death
mutants
104 Citations (Scopus)
lesions (plant)
Salicylic Acid
hypersensitive response
jasmonic acid
Arabidopsis
15 Citations (Scopus)

The Azotobacter vinelandii nifL-like gene: nucleotide sequence analysis and regulation of expression

Raina, R., Bageshwar, U. K. & Das, H. K., Mar 1993, In : MGG Molecular & General Genetics. 237, 3, p. 400-406 7 p.

Research output: Contribution to journalArticle

Azotobacter vinelandii
Sequence Analysis
Genes
Klebsiella pneumoniae
Novobiocin
9 Citations (Scopus)
Azotobacter vinelandii
Ferredoxins
Vanadium
Nitrogen Fixation
Open Reading Frames
8 Citations (Scopus)

Transcriptional and metabolic signatures of Arabidopsis responses to chewing damage by an insect herbivore and bacterial infection and the consequences of their interaction

Appel, H. M., Maqbool, S. B., Raina, S., Jagadeeswaran, G., Acharya, B. R., Hanley, J. C., Miller, K. P., Hearnes, L., Hearnes, L., Raina, R. & Schultz, J. C., Sep 17 2014, In : Frontiers in Plant Science. 5, SEP, 441.

Research output: Contribution to journalArticle

mastication
bacterial infections
insect larvae
herbivores
Arabidopsis
Conference contribution

Classification of gene expression levels using activator and repressor motifs

Sheng, H., Mehrotra, K., Mohan, C. K. & Raina, R., 2008, Proceedings - 2008 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. p. 215-218 4 p. 4686239

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Gene Expression
Yeast
Support vector machines
Saccharomyces cerevisiae
3 Citations (Scopus)

HAMMER algorithm: Hashing with arithmetic modulo-4 for motif extraction of regulatory elements

Sheng, H., Mehrotra, K., Mohan, C. K. & Raina, R., 2007, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. p. 753-758 6 p. 4375645

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Genetic Promoter Regions
Substitution reactions
Databases
Experiments

Identification of structured motifs

Sheng, H., Mehrotra, K., Mohan, C. K. & Raina, R., 2009, Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009. p. 249-253 5 p. 5332103

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nucleotides

Prediction of biological functions by histone modification patterns profiling

Xiao, Y., Mehrotra, K. G., Mohan, C. K., Choudhary, P. & Raina, R., 2017, Proceedings of the 9th International Conference on Bioinformatics and Computational Biology, BICOB 2017. The International Society for Computers and Their Applications (ISCA), p. 217-222 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Histone Code
Genes
Gene expression
Support vector machines
Logistics
1 Citation (Scopus)

SMAlign: Alignment of DNA sequences with gap constraints

Alobaid, F., Mehrotra, K., Mohan, C. K. & Raina, R., 2012, 4th International Conference on Bioinformatics and Computational Biology 2012, BICoB 2012. p. 43-50 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA sequences

Structured motif extraction using affinity based cluster analysis

Alobaid, F., Mehrotra, K., Mohan, C. K. & Raina, R., 2013, 5th International Conference on Bioinformatics and Computational Biology 2013, BICoB 2013. p. 59-66 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cluster analysis
Cluster Analysis
Nucleotide Motifs
Genetic Promoter Regions
DNA

Utilizing cis-elements to refine gene regulatory networks

Xiao, Y., Mehrotra, K., Mohan, C. K. & Raina, R., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 65-71 7 p. 6732737

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Transcription factors
Binding sites
Network architecture
Gene expression